Overview
This comprehensive guide covers testing nf-core components using nf-test. This guide provides everything needed to create robust, maintainable tests for modules, subworkflows, and pipelines, from writing your first test to implementing advanced patterns.
Guide structure
Getting started
- Installation - Setting up nf-test in your development environment
- Project setup - Configuring your nf-core pipeline repository for testing with nf-test
- Contributing
- Pipelines
- Software packaging
- nf-test
- Website
- Code editors and styling
- Github
- How to contribute to nf-core
- Project proposals
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- Tutorials
- Use nf-core pipelines
- Adding a pipeline
- Tests and test data
- Pipelines
- Contributing to nf-core
- External usage
- Google colab
- Nextflow training
- nf-core training
- Contributing training
- Overview
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- Guidelines
- Graphic design
- Pipelines
- Components
- Documentation
- External use
- Google slides progressbar
- Pull request review
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- Checklists
- Pipeline release
- Community governance
- nf-core/tools
- Installation
- Test datasets
- TUI
- Custom remotes
- API Reference