Description

Prepare sequences for subsequent alignment with lastal.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

fastx:file

Sequence file in FASTA or FASTQ format. May be compressed with gzip.

*.{fasta,fasta.gz,fastq,fastq.gz}

Output

name:type
description
pattern

index

meta:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

lastdb:directory

directory containing the files of the LAST index

lastdb/

versions

versions.yml:file

File containing software versions

versions.yml

Tools